Index _ | A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | V | W | X | Y _ __getitem__() (homcloud.interface.PDList method) A add_edges() (in module homcloud.py3dmolhelper) add_surface() (in module homcloud.py3dmolhelper) all_nodes (homcloud.interface.PHTrees property) ancestors() (homcloud.interface.PHTrees.Volume method) B BaseDrawer (class in homcloud.paraview_interface) birth (homcloud.interface.Pair property) birth_death_times() (homcloud.interface.PD method) birth_pixel() (homcloud.interface.BitmapPHTrees.Node method) birth_pos (homcloud.interface.Pair property) birth_pos() (homcloud.interface.OptimalVolume method) birth_position (homcloud.interface.Pair property) birth_position() (homcloud.interface.BitmapOptimal1Cycle method) (homcloud.interface.BitmapPHTrees.Node method) (homcloud.interface.Optimal1Cycle method) (homcloud.interface.OptimalVolume method) birth_position_symbols (homcloud.interface.Pair property) birth_positions (homcloud.interface.PD attribute) birth_simplex() (homcloud.interface.PHTrees.Volume method) birth_time() (homcloud.interface.BitmapOptimal1Cycle method) (homcloud.interface.BitmapPHTrees.Node method) (homcloud.interface.GraphOptimal1Cycle method) (homcloud.interface.Optimal1Cycle method) (homcloud.interface.Pair method) (homcloud.interface.PHTrees.Volume method) (homcloud.interface.Volume method) births (homcloud.interface.PD attribute) Bitmap3d() (in module homcloud.plotly_3d) Bitmap3D() (in module homcloud.pyvistahelper) bitmap_phtrees() (homcloud.interface.PDList method) BitmapOptimal1Cycle (class in homcloud.interface) BitmapPHTrees (class in homcloud.interface) BitmapPHTrees.Node (class in homcloud.interface) BitmapPHTrees.StableVolume (class in homcloud.interface) BitmapPHTrees.Volume (class in homcloud.interface) bottleneck() (in module homcloud.interface.distance) boundary() (homcloud.interface.PHTrees.Volume method) (homcloud.interface.Volume method) boundary_loop() (homcloud.interface.Volume method) boundary_loop_symbols() (homcloud.interface.Volume method) boundary_points() (homcloud.interface.BitmapOptimal1Cycle method) (homcloud.interface.GraphOptimal1Cycle method) (homcloud.interface.Optimal1Cycle method) (homcloud.interface.PHTrees.Volume method) (homcloud.interface.Volume method) boundary_points_symbols() (homcloud.interface.Optimal1Cycle method) (homcloud.interface.PHTrees.Volume method) (homcloud.interface.Volume method) boundary_symbols() (homcloud.interface.PHTrees.Volume method) (homcloud.interface.Volume method) C cells() (homcloud.interface.Volume method) children() (homcloud.interface.BitmapPHTrees.Node method) (homcloud.interface.Volume method) clip_sphere() (homcloud.paraview_interface.PipelineNode method) close() (homcloud.interface.PDList method) color_by() (homcloud.paraview_interface.PipelineNode method) CubeDrawer (class in homcloud.paraview_interface) cubes() (homcloud.interface.Volume method) D death (homcloud.interface.Pair property) death_pixel() (homcloud.interface.BitmapPHTrees.Node method) death_pos (homcloud.interface.Pair property) death_pos() (homcloud.interface.Volume method) death_position (homcloud.interface.Pair property) death_position() (homcloud.interface.BitmapPHTrees.Node method) (homcloud.interface.Volume method) death_position_symbols (homcloud.interface.Pair property) death_positions (homcloud.interface.PD attribute) death_simplex() (homcloud.interface.PHTrees.Volume method) death_time() (homcloud.interface.BitmapOptimal1Cycle method) (homcloud.interface.BitmapPHTrees.Node method) (homcloud.interface.GraphOptimal1Cycle method) (homcloud.interface.Optimal1Cycle method) (homcloud.interface.Pair method) (homcloud.interface.PHTrees.Volume method) (homcloud.interface.Volume method) deaths (homcloud.interface.PD attribute) degree (homcloud.interface.Pair property) (homcloud.interface.PD attribute) degree() (homcloud.interface.BitmapPHTrees method) diagram (homcloud.interface.Pair attribute) distance_transform() (in module homcloud.interface) draw_birthdeath_pixels_2d() (in module homcloud.interface) draw_volumes_on_2d_image() (in module homcloud.interface) dth_diagram() (homcloud.interface.PDList method) dump_to_dict() (homcloud.interface.EigenVolume method) (homcloud.interface.Volume method) E edges (homcloud.interface.SliceHistogram attribute) EigenVolume (class in homcloud.interface) empty() (homcloud.interface.PD static method) essential() (homcloud.interface.BitmapPHTrees.Node method) essential_birth_positions (homcloud.interface.PD attribute) essential_births (homcloud.interface.PD attribute) essential_nodes (homcloud.interface.BitmapPHTrees attribute) example_data() (in module homcloud.interface) F filter_pairs() (homcloud.interface.MaskHistogram method) filter_pd() (homcloud.interface.MaskHistogram method) for_bitmap_levelset() (homcloud.interface.BitmapPHTrees static method) from_alpha_filtration() (homcloud.interface.PDList static method) from_array() (homcloud.paraview_interface.PointCloud static method) from_birth_death() (homcloud.interface.PD static method) from_bitmap_distance_function() (homcloud.interface.PDList static method) from_bitmap_levelset() (homcloud.interface.PDList static method) from_boundary_information() (homcloud.interface.PDList static method) from_rips_filtration() (homcloud.interface.PDList static method) from_simplicial_levelset() (homcloud.interface.PDList static method) G GraphOptimal1Cycle (class in homcloud.interface) H Histogram (class in homcloud.interface) histogram() (homcloud.interface.PD method) histogram_from_vector() (homcloud.interface.HistoSpec method) HistoSpec (class in homcloud.interface) homcloud.interface module homcloud.interface.distance module homcloud.paraview_interface module homcloud.plotly_3d module homcloud.py3dmolhelper module homcloud.pyvistahelper module HomCloudError I invoke_gui_plotter() (homcloud.interface.PDList method) isroot() (homcloud.interface.BitmapPHTrees.Node method) L lifetime() (homcloud.interface.BitmapPHTrees.Node method) (homcloud.interface.Pair method) (homcloud.interface.PHTrees.Volume method) (homcloud.interface.Volume method) Lines() (in module homcloud.pyvistahelper) LinesDrawer (class in homcloud.paraview_interface) living() (homcloud.interface.PHTrees.Volume method) living_descendants() (homcloud.interface.PHTrees.Node method) load_phtrees() (homcloud.interface.PD method) loadtxt_nd() (in module homcloud.interface) Loop() (in module homcloud.pyvistahelper) M mask_from_vector() (homcloud.interface.HistoSpec method) MaskHistogram (class in homcloud.interface) Mesh (in module homcloud.interface) module homcloud.interface homcloud.interface.distance homcloud.paraview_interface homcloud.plotly_3d homcloud.py3dmolhelper homcloud.pyvistahelper N nearest_pair_node() (homcloud.interface.BitmapPHTrees method) nearest_pair_to() (homcloud.interface.PD method) nodes (homcloud.interface.BitmapPHTrees attribute) nodes_of() (homcloud.interface.PHTrees method) nonessential_nodes (homcloud.interface.BitmapPHTrees attribute) O Optimal1Cycle (class in homcloud.interface) optimal_1_cycle() (homcloud.interface.Pair method) optimal_volume() (homcloud.interface.Pair method) OptimalVolume (class in homcloud.interface) P Pair (class in homcloud.interface) pair() (homcloud.interface.PD method) pair_node_nearest_to() (homcloud.interface.PHTrees method) pair_nodes_in_rectangle() (homcloud.interface.BitmapPHTrees method) (homcloud.interface.PHTrees method) pairs() (homcloud.interface.PD method) pairs_in_rectangle() (homcloud.interface.PD method) parent() (homcloud.interface.BitmapPHTrees.Node method) path (homcloud.interface.PD attribute) path() (homcloud.interface.BitmapOptimal1Cycle method) (homcloud.interface.Optimal1Cycle method) path_symbols() (homcloud.interface.Optimal1Cycle method) PD (class in homcloud.interface) pd_histogram() (homcloud.interface.HistoSpec method) PDList (class in homcloud.interface) PDList.FileType (class in homcloud.interface) PHTrees (class in homcloud.interface) PHTrees.Node (class in homcloud.interface) PHTrees.StableVolume (class in homcloud.interface) PHTrees.Volume (class in homcloud.interface) PipelineNode (class in homcloud.paraview_interface) PIVectorizerMesh (in module homcloud.interface) PIVectorizeSpec (class in homcloud.interface) plot() (homcloud.interface.Histogram method) (homcloud.interface.SliceHistogram method) PointCloud (class in homcloud.paraview_interface) PointCloud() (in module homcloud.plotly_3d) points() (homcloud.interface.PHTrees.Volume method) (homcloud.interface.Volume method) points_symbols() (homcloud.interface.PHTrees.Volume method) (homcloud.interface.Volume method) PolyLine() (in module homcloud.paraview_interface) PolyLineDrawer (class in homcloud.paraview_interface) R restore_from_dict() (homcloud.interface.EigenVolume class method) (homcloud.interface.Volume class method) roots (homcloud.interface.BitmapPHTrees attribute) S save() (homcloud.interface.PDList method) set_color() (homcloud.paraview_interface.PipelineNode method) set_linewidth() (homcloud.paraview_interface.PipelineNode method) set_opacity() (homcloud.paraview_interface.PipelineNode method) set_pointsize() (homcloud.paraview_interface.PipelineNode method) show() (in module homcloud.paraview_interface) show_slice3d() (in module homcloud.interface) SimpleScene() (in module homcloud.plotly_3d) SimplexDrawer (class in homcloud.paraview_interface) simplices() (homcloud.interface.PHTrees.Volume method) (homcloud.interface.Volume method) simplices_symbols() (homcloud.interface.Volume method) slice_histogram() (homcloud.interface.PD method) SliceHistogram (class in homcloud.interface) SparseBitmapDrawer (class in homcloud.paraview_interface) SparseCubeDrawer (class in homcloud.paraview_interface) SparseVoxels() (in module homcloud.pyvistahelper) SphereClip (class in homcloud.paraview_interface) stable_subvolume() (homcloud.interface.OptimalVolume method) stable_volume() (homcloud.interface.BitmapPHTrees.Node method) (homcloud.interface.Pair method) (homcloud.interface.PHTrees.Node method) StableSubvolume (class in homcloud.interface) StableVolume (class in homcloud.interface) SurfaceDrawer (class in homcloud.paraview_interface) T Threshold (class in homcloud.paraview_interface) threshold (homcloud.interface.EigenVolume attribute) threshold() (homcloud.paraview_interface.PipelineNode method) tightened_subvolume() (homcloud.interface.OptimalVolume method) tightened_volume() (homcloud.interface.Pair method) to_paraview_node() (homcloud.interface.BitmapOptimal1Cycle method) (homcloud.interface.BitmapPHTrees.Volume method) (homcloud.interface.PHTrees.Volume method) (homcloud.interface.Volume method) (homcloud.paraview_interface.PipelineNode method) to_paraview_node_for_1cycles() (homcloud.interface.BitmapOptimal1Cycle static method) to_paraview_node_for_volumes() (homcloud.interface.Volume static method) to_paraview_node_from_nodes() (homcloud.interface.BitmapPHTrees static method) (homcloud.interface.PHTrees method) to_plotly3d() (homcloud.interface.BitmapOptimal1Cycle method) (homcloud.interface.BitmapPHTrees.Volume method) (homcloud.interface.Optimal1Cycle method) (homcloud.interface.PHTrees.Volume method) (homcloud.interface.Volume method) to_plotly3d_mesh() (homcloud.interface.PHTrees.Volume method) (homcloud.interface.Volume method) to_plotly3d_trace() (homcloud.interface.BitmapOptimal1Cycle method) (homcloud.interface.BitmapPHTrees.Volume method) (homcloud.interface.Optimal1Cycle method) (homcloud.interface.PHTrees.Volume method) (homcloud.interface.Volume method) to_pvnode() (homcloud.interface.BitmapOptimal1Cycle method) (homcloud.interface.BitmapPHTrees.Volume method) (homcloud.interface.PHTrees.Volume method) (homcloud.interface.Volume method) to_pvnode_for_1cycle() (homcloud.interface.BitmapOptimal1Cycle static method) to_pvnode_from_nodes() (homcloud.interface.BitmapPHTrees static method) (homcloud.interface.PHTrees method) to_pyvista_boundary_mesh() (homcloud.interface.Volume method) to_pyvista_mesh() (homcloud.interface.BitmapOptimal1Cycle method) (homcloud.interface.BitmapPHTrees.Volume method) (homcloud.interface.Optimal1Cycle method) (homcloud.interface.PHTrees.Volume method) to_pyvista_volume_mesh() (homcloud.interface.Volume method) Triangles() (in module homcloud.pyvistahelper) V values (homcloud.interface.Histogram property) (homcloud.interface.SliceHistogram attribute) vector_size() (homcloud.interface.HistoSpec method) vectorize() (homcloud.interface.PIVectorizeSpec method) vectorize_pair() (homcloud.interface.PIVectorizeSpec method) Volume (class in homcloud.interface) volume() (homcloud.interface.BitmapPHTrees.Node method) (homcloud.interface.BitmapPHTrees.StableVolume method) volume_simplices_symbols() (homcloud.interface.PHTrees.Volume method) (homcloud.interface.Volume method) VolumeNotFound VoxelData() (in module homcloud.paraview_interface) VTK (class in homcloud.paraview_interface) W wasserstein() (in module homcloud.interface.distance) write_python_code() (in module homcloud.paraview_interface) X x1 (homcloud.interface.SliceHistogram attribute) x2 (homcloud.interface.SliceHistogram attribute) x_bins() (homcloud.interface.Histogram method) x_range() (homcloud.interface.Histogram method) xedges (homcloud.interface.Histogram attribute) XMLVTI (class in homcloud.paraview_interface) Y y1 (homcloud.interface.SliceHistogram attribute) y2 (homcloud.interface.SliceHistogram attribute) y_bins() (homcloud.interface.Histogram method) y_range() (homcloud.interface.Histogram method) yedges (homcloud.interface.Histogram attribute)