Welcome to homcloud’s documentation!

Contents:

• API Outline
  • homcloud.interface.PDList
  • homcloud.interface.PD
  • Other classes
• homcloud.interface module
  • BitmapOptimal1Cycle
    • BitmapOptimal1Cycle.birth_position()
    • BitmapOptimal1Cycle.birth_time()
    • BitmapOptimal1Cycle.boundary_points()
    • BitmapOptimal1Cycle.death_time()
    • BitmapOptimal1Cycle.path()
    • BitmapOptimal1Cycle.to_plotly3d()
    • BitmapOptimal1Cycle.to_plotly3d_trace()
    • BitmapOptimal1Cycle.to_pyvista_mesh()
  • BitmapPHTrees
    • BitmapPHTrees.nodes
    • BitmapPHTrees.essential_nodes
    • BitmapPHTrees.nonessential_nodes
    • BitmapPHTrees.roots
    • BitmapPHTrees.Node
      • BitmapPHTrees.Node.birth_pixel()
      • BitmapPHTrees.Node.birth_position()
      • BitmapPHTrees.Node.birth_time()
      • BitmapPHTrees.Node.children()
      • BitmapPHTrees.Node.death_pixel()
      • BitmapPHTrees.Node.death_position()
      • BitmapPHTrees.Node.death_time()
      • BitmapPHTrees.Node.essential()
      • BitmapPHTrees.Node.isroot()
      • BitmapPHTrees.Node.lifetime()
      • BitmapPHTrees.Node.parent()
      • BitmapPHTrees.Node.stable_volume()
      • BitmapPHTrees.Node.volume()
    • BitmapPHTrees.StableVolume
      • BitmapPHTrees.StableVolume.volume()
    • BitmapPHTrees.Volume
      • BitmapPHTrees.Volume.to_plotly3d()
      • BitmapPHTrees.Volume.to_plotly3d_trace()
      • BitmapPHTrees.Volume.to_pyvista_mesh()
    • BitmapPHTrees.degree()
    • BitmapPHTrees.for_bitmap_levelset()
    • BitmapPHTrees.nearest_pair_node()
    • BitmapPHTrees.pair_nodes_in_rectangle()
  • EigenVolume
    • EigenVolume.threshold
    • EigenVolume.dump_to_dict()
    • EigenVolume.restore_from_dict()
  • GraphOptimal1Cycle
    • GraphOptimal1Cycle.birth_time()
    • GraphOptimal1Cycle.boundary_points()
    • GraphOptimal1Cycle.death_time()
  • HistoSpec
    • HistoSpec.histogram_from_2darray()
    • HistoSpec.histogram_from_vector()
    • HistoSpec.mask_from_vector()
    • HistoSpec.pd_histogram()
    • HistoSpec.vector_size()
  • Histogram
    • Histogram.x_range()
    • Histogram.x_bins()
    • Histogram.y_range()
    • Histogram.y_bins()
    • Histogram.has_ess_values()
    • Histogram.xedges
    • Histogram.yedges
    • Histogram.ess_values
    • Histogram.plot()
    • Histogram.values
  • HomCloudError
  • MaskHistogram
    • MaskHistogram.filter_pairs()
    • MaskHistogram.filter_pd()
  • Mesh
  • Optimal1Cycle
    • Optimal1Cycle.birth_position()
    • Optimal1Cycle.birth_time()
    • Optimal1Cycle.boundary_points()
    • Optimal1Cycle.boundary_points_symbols()
    • Optimal1Cycle.death_time()
    • Optimal1Cycle.path()
    • Optimal1Cycle.path_symbols()
    • Optimal1Cycle.to_plotly3d()
    • Optimal1Cycle.to_plotly3d_trace()
    • Optimal1Cycle.to_pyvista_mesh()
  • OptimalVolume
    • OptimalVolume.birth_pos()
    • OptimalVolume.birth_position()
    • OptimalVolume.restore_from_dict()
    • OptimalVolume.stable_subvolume()
    • OptimalVolume.tightened_subvolume()
  • PD
    • PD.path
    • PD.degree
    • PD.births
    • PD.deaths
    • PD.birth_positions
    • PD.death_positions
    • PD.essential_births
    • PD.essential_birth_positions
    • PD.birth_death_times()
    • PD.birth_positions_by()
    • PD.death_positions_by()
    • PD.empty()
    • PD.essential_birth_positions_by()
    • PD.from_birth_death()
    • PD.histogram()
    • PD.load_phtrees()
    • PD.nearest_pair_to()
    • PD.pair()
    • PD.pairs()
    • PD.pairs_in_rectangle()
    • PD.slice_histogram()
  • PDList
    • PDList.__getitem__()
    • PDList.bitmap_phtrees()
    • PDList.close()
    • PDList.dth_diagram()
    • PDList.from_alpha_filtration()
    • PDList.from_bitmap_distance_function()
    • PDList.from_bitmap_levelset()
    • PDList.from_boundary_information()
    • PDList.from_coupled_alpha_relative_filtration()
    • PDList.from_rips_filtration()
    • PDList.from_simplicial_levelset()
    • PDList.save()
  • PHTrees
    • PHTrees.Node
      • PHTrees.Node.living_descendants()
      • PHTrees.Node.stable_volume()
    • PHTrees.StableVolume
    • PHTrees.Volume
      • PHTrees.Volume.birth_time()
      • PHTrees.Volume.death_time()
      • PHTrees.Volume.lifetime()
      • PHTrees.Volume.simplices()
      • PHTrees.Volume.boundary()
      • PHTrees.Volume.birth_simplex()
      • PHTrees.Volume.death_simplex()
      • PHTrees.Volume.ancestors()
      • PHTrees.Volume.boundary_points()
      • PHTrees.Volume.boundary_points_symbols()
      • PHTrees.Volume.boundary_symbols()
      • PHTrees.Volume.living()
      • PHTrees.Volume.points()
      • PHTrees.Volume.points_symbols()
      • PHTrees.Volume.to_plotly3d()
      • PHTrees.Volume.to_plotly3d_mesh()
      • PHTrees.Volume.to_plotly3d_trace()
      • PHTrees.Volume.to_pyvista_mesh()
      • PHTrees.Volume.volume_simplices_symbols()
    • PHTrees.all_nodes
    • PHTrees.nodes_of()
    • PHTrees.pair_node_nearest_to()
    • PHTrees.pair_nodes_in_rectangle()
  • PIVectorizeSpec
    • PIVectorizeSpec.vectorize()
    • PIVectorizeSpec.vectorize_pair()
  • PIVectorizerMesh
  • Pair
    • Pair.diagram
    • Pair.birth
    • Pair.birth_pos
    • Pair.birth_position
    • Pair.birth_position_by()
    • Pair.birth_position_symbols
    • Pair.birth_time()
    • Pair.death
    • Pair.death_pos
    • Pair.death_position
    • Pair.death_position_by()
    • Pair.death_position_symbols
    • Pair.death_time()
    • Pair.degree
    • Pair.lifetime()
    • Pair.optimal_1_cycle()
    • Pair.optimal_volume()
    • Pair.stable_volume()
    • Pair.tightened_volume()
  • SliceHistogram
    • SliceHistogram.values
    • SliceHistogram.edges
    • SliceHistogram.x1
    • SliceHistogram.y1
    • SliceHistogram.x2
    • SliceHistogram.y2
    • SliceHistogram.plot()
  • StableSubvolume
  • StableVolume
  • Volume
    • Volume.birth_time()
    • Volume.boundary()
    • Volume.boundary_loop()
    • Volume.boundary_loop_symbols()
    • Volume.boundary_points()
    • Volume.boundary_points_symbols()
    • Volume.boundary_symbols()
    • Volume.cells()
    • Volume.children()
    • Volume.cubes()
    • Volume.death_pos()
    • Volume.death_position()
    • Volume.death_time()
    • Volume.dump_to_dict()
    • Volume.lifetime()
    • Volume.points()
    • Volume.points_symbols()
    • Volume.restore_from_dict()
    • Volume.simplices()
    • Volume.simplices_symbols()
    • Volume.to_plotly3d()
    • Volume.to_plotly3d_mesh()
    • Volume.to_plotly3d_trace()
    • Volume.to_pyvista_boundary_mesh()
    • Volume.to_pyvista_volume_mesh()
    • Volume.volume_simplices_symbols()
  • VolumeNotFound
  • distance_transform()
  • draw_birthdeath_pixels_2d()
  • draw_volumes_on_2d_image()
  • example_data()
  • loadtxt_nd()
  • parallel_volume_computation()
  • show_slice3d()
  • bottleneck()
  • wasserstein()
• pyvistahelper module
  • Bitmap3D()
  • Lines()
  • Loop()
  • SparseVoxels()
  • Triangles()
• py3dmolhelper module
  • add_edges()
  • add_surface()
• plotly_3d module
  • Bitmap3d()
  • PointCloud()
  • SimpleScene()

Indices and tables

• Index

• Module Index

• Search Page